Extracting Leaf Area Index Using Viewing Geometry Effects - A New Perspective on High-Resolution Unmanned Aerial System Photography.

Abstract

Extraction of leaf area index (LAI) is an important prerequisite in numerous studies related to plant ecology, physiology and breeding. LAI is indicative for the performance of a plant canopy and of its potential for growth and yield. In this study, a novel method to estimate LAI based on RGB images taken by an unmanned aerial system (UAS) is introduced. Soybean was taken as the model crop of investigation. The method integrates viewing geometry information in an approach related to gap fraction theory. A 3-D simulation of virtual canopies helped developing and verifying the underlying model. In addition, the method includes techniques to extract plot based data from individual oblique images using image projection, as well as image segmentation applying an active learning approach. Data from a soybean field experiment were used to validate the method. The thereby measured LAI 14 prediction accuracy was comparable with the one of a gap fraction-based handheld device (R2 of 0.92, RMSE of 0.42 m2 m2) and correlated well with destructive LAI measurements (R2 of 0.89, RMSE of 0.41 m2 m2). These results indicate that, if respecting the range (LAI ≤3) the method was tested for, extracting LAI from UAS derived RGB images using viewing geometry information represents a valid alternative to destructive and optical handheld device LAI measurements in soybean. Thereby, we open the door for automated, high-throughput assessment of LAI in plant and crop science.

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Preprints for Agriculture and Allied Sciences
Advisory Board
  • Leisa Armstrong, Edith Cowan University, Australia
  • Arianna Becerril García, Autonomous University of the State of Mexico, Redalyc/AmeliCA, Mexico
  • Susmita Das, Bangladesh Agricultural Research Council
  • Abeer Elhalwagi, National Gene Bank, Egypt
  • Gopinath KA, Central Research Institute for Dryland Agriculture
  • Niklaus Grünwald, USDA Agricultural Research Service
  • Sridhar Gutam, ICAR IIHR/Open Access India
  • Vinodh Ilangovan, Max Planck Institute for Biophysical Chemistry
  • Jayalakshmi M, ANGRAU, India
  • Khelif Karima, Institut National de la Recherche Agronomique d'Algérie
  • Dinesh Kumar, Indian Agricultural Statistics Research Institute
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  • Satendra Kumar Singh, Indian Council of Agricultural Research
  • Devika P. Madalli, DRTC/Indian Statistical Institute, India
  • Prateek Mahalwar, Cellulosic Technologies UG, Germany
  • Bernard Pochet, University of Liège - Gembloux Agro-Bio Tech
  • Vassilis Protonotarios, NEUROPUBLIC
  • Andy Robinson, CABI
  • Paraj Shukla, King Saud University
  • Chandni Singh, Indian Institute for Human Settlements
  • Kuldeep Singh Jadon, ICAR-Central Arid Zone Research Institute, India
  • Rajeev K Varshney, CGIAR/ICRISAT, India
  • Sumant Vyas, ICAR- National Research Centre on Camel, India
  • Oya Yildirim Rieger, Ithaka S+R/ITHAKA, USA
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